Saturday, 26 July 2008

Introduction to Bioinformatics by Arthur Lesk

Introduction to Bioinformatics by Arthur Lesk is a timely and much-needed textbook which provides an accessible and thorough introduction to a subject which is becoming a fundamental part of biological science today. As a pioneer of the use of bioinformatics techniques in research, Dr Lesk brings unrivalled experience and expertise to the study of this field. The aim of the book is to generate an understanding of the biological background of bioinformatics, and to integrate this with an introduction to the use of computational skills.


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Monday, 21 July 2008

The Structures of Life

Title: The Structures of Life

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B0015PS1XC

Publication: 2002

Pages: 96


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The New Genetics

Title: The New Genetics

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B0015PJT88

Publication: 2006

Pages: 96


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The Chemistry of Health

Title: The Chemistry of Health

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B00153O5QQ

Publication: 2006

Pages: 76


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Inside the Cells

Title: Inside the Cells

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B00153OIN6

Publication: 2005

Pages: 84


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Medicine by Design

Title: Medicine by Design

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B00153MA22

Publication: 2006

Pages: 57


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From Molecules to Medicines

Title: From Molecules to Medicines

Author(s): National Institute of General Medical Science

Series: Research and Training Programs of the National Institute of General Medical Sciences

Publisher: National Insitute of Health

ISBN: B00158SKC6

Publication: 2002

Pages: 28


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Investing in Discovery

Title: Investing in Discovery (National Institute of General Medical Sciences Strategic Plan 2008 - 2012)

Author(s): National Institute of General Medical Sciences

Publisher: National Institute of General Medical Sciences

Publication: 2008

Pages: 24


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Dendritic Cell Interactions with Bacteria

Emerging evidence suggests that dendritic cells play a major role in the orchestration of the immune response to bacteria. This volume introduces the reader to the complex world of dendritic cells and describes how the intimate interplay between dendritic cells, bacteria and the environment dictates either the induction of immunity or tolerance to the encountered microorganisms. It discusses how this can allow organisms to tolerate beneficial bacteria and to react against pathogens, as well as the strategies pathogenic bacteria have evolved to escape dendritic cell patrolling. Expert contributors discuss everything from bacterial capture and recognition to their killing, processing and the induction of adaptive immunity. Particular focus is on the tissue context in which bacteria are handled by dendritic cells and on possible defects therein, which may potentially lead to chronic infection or inflammation. Graduate students and researchers will find this an invaluable overview of current dendritic cell biology research.


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Saturday, 19 July 2008

Measuring Gene Expression

In the post-genomic age, much biomedical research looks at when, where, and at what level genes are expressed. Measuring Gene Expression: The Basics is an all-in-one introduction to the main methods of measuring gene expression, including RT-PCR, differential display, RNA interference, reporter genes, microarrays, and proteomics, as well as a section on RNA isolation and analysis. There will be an overview of each method: its pros and cons, sample preparation, sources of error, and data interpretation.

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DNA Sequence Analysis Tools

DNA Sequence Analysis Tools

Restriction, Detect repeats & unusual Patterns

  • Restrictionmapper

  • Webcutter (Restriction analysis)

  • RepeatMasker (Search interspersed repeats and low complexity sequences)

  • dnadot (Find regions of similarity in two sequences and repeats within a single sequence at Colorado State University, USA)

  • LALIGN (Finds multiple matching subsegments in two sequences at EMBnet, Swiss node)

  • Tandem Repeats Finder (at Mount Sinai School of Medecine, NY, USA)

  • Dot Plot (Compare a large sequence with itself at Virtual Genome Center)

  • Blast 2 Sequences (Compare two sequences <150>

  • Zinfo (Detection of unusual sequences in large DNAs at Virtual Genome Center), USA)

  • REPuter (Fast computation of maximal repeats in complete genomes at Bielefeld University, Germany)

  • LALIGN (Finds multiple matching subsegments in two sequences at EMBnet, Swiss node)

Align Sequences

  • Align (Pairwise sequence alignment with GAP, SIM (DNA or protein alignment), NAP, LAP2 (DNA-protein alignment) or GAP2 (DNA-cDNA alignment)

  • ClustalW (at EBI, UK)

  • Launcher: multiple alignment (Choose from different alignment applications at Bailor College of Medecine, Houston, Tx, USA)

  • CINEMA (Colour INteractive Editor for Multiple Alignments at BCM group, UK)

  • MAP (Multiple alignment of (long) sequences without penalizing large gaps)

  • ClustalW (Multiple sequence alignment at WUSTL, USA)

  • ClustalW (at the Baylor College of Medicine, USA)

  • AMAS (Analyze multiple aligned sequences at Oxford University, UK)

Find Genes

  • Webtrans (Translation and codon usage of very large sequences at Virtual Genome Center)

  • GeneMark (Species-specific search for genes with WebGeneMark , WebGeneMark.hmm and Heuristic GeneMark at Georgia Institute of Technology , USA)

  • GenLang (Exon recognition at University of Pennsylvania, USA)

  • GeneMachine (Integrated comparative and predictive gene identification at NHGRI, USA)

  • AAT (Analysis and Annotation Tool for finding genes in genomic sequences at Michigan Tech, USA)

  • Sixframe (Translate DNA sequence in all 6 possible frames)

  • ORF Finder (at NCBI)

  • GeneMark (Species-specific search for genes cfr. WebGeneMark at EBI, UK)

  • GRAIL (Exon recognition USA).

  • Gene feature (Exon recognition, Promoter and Transcription Factor Binding Site Prediction, Open Reading Frame Identification.at Baylor College of Medicine (USA):

  • NetPlantGene (Prediction of splice sites in Arabidopsis at CBS, Denmark)

Find Transcriptional elements

Find t RNA

  • tRNAscan-SE (Search for tRNA genes in genomic sequence at Washington University, St Louis, US)

  • FAStRNA (Predict potential tRNA genes in genomic sequences at Institut Pasteur, Paris, France)

Other Tools

  • CountCodon (Analyse codon usage in protein coding sequence at Kazuasa DNA Research Institute, Jp)

  • DNA folding server (Fold secondary structures)

  • Netprimer (Free online primer analysis at Premier Biosoft Int., Ca, USA)

  • IMGT/V-QUEST an interactive tool for immunoglobulin and T cell receptor sequence analysis

  • MAR-Finder (Search for matrix association regions at NCGR, Santa Fe, USA)

  • Reverse Complement (Convert DNA sequence data to it's Reverse Complement.)

  • PRIDE (Primer design atDFKZ, Heidelberg, Germany)

  • PCR primer selection

  • Primer3 (PCR primer selection tool at Whitehead Institute for Biomedical Research, US)

  • GeneFisher (Interactive PCR primer design tool at the University of Bielefeld, Germany)

  • CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer design at the Weizmann Institute, Israel)

Cancer Vaccines

Cancer Vaccines: Challenges and Opportunities in Translation is the first text in the field to bring immunotherapy treatments from the laboratory trial to the bedside for the practicing oncologist. Topics include: · personalized immunotherapies · the gap between preclinical models and clinical situation · biomarker guided R&D and clinical development · flexible trial design · and more… With a focus on both the development of new vaccines to the administration of personalized therapeutic modalities, oncologists, immunologists, pharmaceutical scientists, drug developers, and oncological researchers will all find Cancer Vaccines: Challenges and Opportunities in Translation, a welcome addition to any library.

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Thursday, 17 July 2008

Lehninger Principles of Biochemistry

The Lehnninger text has a long history, but given that biochemical knowledge doubles every 5 years or so, it matters what a text offers now, not in the past. The writing style is simple, direct, engaging, not too easy but neither too esoteric. The principles (as the title suggests) and the unity in diversity are emphasized, so that the student understands biochemical principles not merely facts, acronyms, pathways. The graphics are very professional. They are comparable to any review article in hot journals such as Nature, Science, Cell, etc. The rendering of protein surfaces, and the different angles through which a structure is seen is outstanding (a good example is the section on the ribosome). The structures have been rendered from the PDB (protein data bank) coordinates. Most are rendered in the ribbon representation, but in many cases the surface is rendered in grey, depending on the level of detail. Contrast this with the 3rd edition of Voet: the authors have not bothered to re-render their graphics, most are identical to the 1995 edition, a time when people only cared if you could generate a structure. Voet's graphics are not done uniformly; the backgrounds can be white, grey, black, some structures are taken directly from the original literature and vary widely in the format and rendering. It is not enough that Voet updated the text on biochemical developments from 1995-2004. The Lehninger pages on the most important protein folds, for example, are very helpful in giving the student a feel for the fold, the domain composition, the size, and names of model proteins one is expected to encounter over and again in the research literature. The text contains brief solutions to all the end-of-chapter problems so the solutions manual (unfortunately titled "The Absolute, Ultimate Guide...") is not really neccessary for the good student. ...


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Wednesday, 16 July 2008

Bioinformatics Books Collection

No Downloads Available for it

Tuesday, 15 July 2008

Nucleic Acids from A to Z

Concise but complete, this mini-encyclopedia contains over 1,500 entries covering all important concepts, compounds, techniques and acronyms for quick and easy reference. Guiding readers through the ever-increasing jungle of nucleic acid science and technology, the book distills the key information out of the large body of primary literature and presents it in a single volume. A first-stop resource for everyone, from students to established researchers, as both a desktop and library reference.


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Genomic Regulatory Systems

The interaction between biology and evolution has been the subject of great interest in recent years. Because evolution is such a highly debated topic, a biologically oriented discussion will appeal not only to scientists and biologists but also to the interested lay person. This topic will always be a subject of controversy and therefore any breaking information regarding it is of great interest. The author is a recognized expert in the field of developmental biology and has been instrumental in elucidating the relationship between biology and evolution. The study of evolution is of interest to many different kinds of people and Genomic Regulatory Systems: In Development and Evolution is written at a level that is very easy to read and understand even for the nonscientist.

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Downstream Processing of Proteins

Mohamed A. Desai and a team of experienced biotechnologists review both conventional and novel isolation techniques used in applications for the downstream processing of protein molecules. These techniques include primary and secondary separations during the isolation of biomolecules, as well as unique laboratory-scale research methods from academia with a potential for scale-up. Also treated are various strands of the downstream biological process essential for a successful product license application, including both the validation of DSP stages, and the design and validation of viral clearance stages during the purification process. Downstream Processing of Proteins: Methods and Protocols provides scientists everywhere, but particularly in the biopharmaceutical and biotechnology industry, with a much-needed introduction to this critical technology.

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Saturday, 12 July 2008

Cancer Gene Therapy

This book brings together all major work achieved during the last decade in the exciting and promising field of cancer gene therapy, focusing on the achievements and definition of future goals. Providing a picture of the vectors available to carry genes in human tumours, it describes the available genes with different mechanisms of action as well as different systems that could be used for targeting tumour cells in humans. A comprehensive review of the important preclinical and clinical studies in cancer gene therapy, Cancer Gene Therapy should be of interest to experts as well as to newcomers to the field.



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Immunology and Evolution of Infectious Disease

From HIV to influenza, the battle between infectious agents and the immune system is at the heart of disease. Knowledge of how and why parasites vary to escape recognition by the immune system is central to vaccine design, the control of epidemics, and our fundamental understanding of parasite ecology and evolution. As the first comprehensive synthesis of parasite variation at the molecular, population, and evolutionary levels, this book is essential reading for students and researchers throughout biology and biomedicine. The author uses an evolutionary perspective to meld the terms and findings of molecular biology, immunology, pathogen biology, and population dynamics. This multidisciplinary approach offers newcomers a readable introduction while giving specialists an invaluable guide to allied subjects. Every aspect of the immune response is presented in the functional context of parasite recognition and defense--an emphasis that gives structure to a tremendous amount of data and brings into sharp focus the great complexity of immunology. The problems that end each chapter set the challenge for future research, and the text includes extensive discussion of HIV, influenza, foot-and-mouth disease, and many other pathogens. This is the only book that treats in an integrated way all factors affecting variation in infectious disease. It is a superb teaching tool and a rich source of ideas for new and experienced researchers. For molecular biologists, immunologists, and evolutionary biologists, this book provides new insight into infectious agents, immunity, and the evolution of infectious disease.

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Aging of the Genome: The Dual Role of DNA in Life and Death

Aging has long since been ascribed to the gradual accumulation of DNA mutations in the genome of somatic cells. However, it is only recently that the necessary sophisticated technology has been developed to begin testing this theory and its consequences. Vijg critically reviews the concept of genomic instability as a possible universal cause of aging in the context of a new, holistic understanding of genome functioning in complex organisms resulting from recent advances in functional genomics and systems biology. It provides an up-to-date synthesis of current research, as well as a look ahead to the design of strategies to retard or reverse the deleterious effects of aging. This is particularly important in a time when we are urgently trying to unravel the genetic component of aging-related diseases. Moreover, there is a growing public recognition of the imperative of understanding more about the underlying biology of aging, driven by continuing demographic change.

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Tuesday, 8 July 2008

Biotechnology 101

Biotechnology 101 does exactly that. This accessible volume provides readers - whether new to the field or just interested members of the lay public - with the essential ideas of biotechnology using a minimum of jargon and mathematics. Concepts are introduced in a progressive order so that more complicated ideas build on simpler ones, and each is discussed in small, bite-sized segments so that they can be more easily understood. Biotechnology 101 provides an introduction to all the of biotechnology, covering such topics as: BLA History of the Science Behind Biotechnology BLThe Tools of Biotechnology BLBiotechnology Innovations BLPrincipal people of Biotechnology BLBiotechnology in Everyday Life BLEthical Issues of Biotechnology This short volume will enable students and lay people to understand the basics of one of the most important scientific fields of endeavor for the future

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Nanotechnology 101

Nanotechnology 101 does exactly that. This accessible volume provides readers -- whether students new to the field or just interested members of the lay public -- with the essential ideas of the new science of nanotechnology using a minimum of jargon and mathematics. Concepts are introduced in a progressive order so that more complicted ideas build on simpler ones, and each is discussed in small, bite-sized segments so that they can be more easily understood. Nanotechnology 101 provides contemporary topics about the infusion of nanotechnology in the areas of the environment, food safety, medicine and healthcare, consumer goods, agriculture, homeland security, and energy supply. Coverage includes: BLHow nanotechnology is going to change our future workplace and workforce BLSocietal and ethical implications of nanoscience and nanotechnology BLCareers in the expanding field of nanotechnology BLMany of the major companies, universities, and government organizations that are investing in nanotechnology research and nanofabrication BLWebsites to explore hands-on nanotechnology activities and classroom projects BLA close alignment with the National Science Education Standards. With a bibliography, sidebars, and interviews with leading figures in the field, Nanotechnology 101 provides the perfect starting point for anyone wishing to understand this burgeoning science

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Genetics 101

Genetics 101 does exactly that. This accessible volume provides readers - whether students new to the field or just interested members of the lay public - with the essential ideas of genetics using a minimum of jargon and mathematics. Concepts are introduced in a progressive order so that more complicated ideas build on simpler ones, and each is discussed in small, bite-sized segments so that they can be more easily understood. Genetics 101 provides readers of all levels a brief introduction for understanding a science that is so essential to the advancement of science today. It covers: # Genetics as a science # The applications of genetics, including developmental genetics and behavioral genetics # Genetics counseling, and other ways in which genetics impacts our lives # The future of the science of genetics, including genetically modified organisms, cloning, and transgenics A glossary and sources for further research complete this handy resource.

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